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MatGraph

The modern, end-to-end Material Science Deep Learning Pipeline & GraphQL API

PyPI - Version Python Versions License: MIT


MatGraph abstracts away the complexity of deep learning for material properties. Designed for both Material Science researchers and ML engineers, it provides a seamless interface to fetch, featurize, predict, and export crystal structures—all powered by modern technologies like PyTorch, GraphQL, and uv.

Key Features (v0.5.0 Update)

  • Universal Interatomic Potentials (M3GNet): New m3gnet architecture for predicting Energy, Forces, and Stresses using simulated 3-body interactions.
  • X-Ray Diffraction (XRD) Simulator: Generate synthetic Cu-Kα XRD patterns directly from the CLI to identify material peaks.
  • Analytics & Evaluation: evaluate command computes Mean Absolute Error (MAE) comparing PyTorch predictions directly against Materials Project ground truth.
  • Raw Structure Export: Automatically export raw 3D crystal structures to standard .cif formats.
  • Multi-Architecture Support: Seamlessly switch between CGCNN, MEGNet, and M3GNet models.
  • Ultra-Fast Engine: Built on top of Astral's uv for lightning-fast environment management.

Installation

We recommend using uv for the fastest installation experience.

# Install via uv (Recommended)
uv tool install matgraph-cli

# Or via standard pip
pip install matgraph-cli

Authentication Setup

To fetch high-fidelity data, you need a free API key from the Materials Project.

export MP_API_KEY="your_api_key_here"

Usage: The Productive CLI

MatGraph's CLI is designed to be highly intuitive.

1. X-Ray Diffraction (XRD) Simulation Generate the theoretical XRD pattern (top peaks and intensities) for any material:

matgraph xrd LiFePO4

2. Universal Interatomic Potentials (M3GNet) Use the M3GNet architecture to predict structural energy, forces, and stresses:

matgraph predict LiFePO4 --model m3gnet

3. Analytics & Model Evaluation Evaluate the accuracy (MAE) of a specific architecture against true scientific data:

matgraph evaluate LiFePO4 --model megnet

4. Advanced Search & Filtering Filter materials based on physical constraints:

matgraph predict LiFePO4 --min-gap 1.5 --crystal-system Cubic --model megnet

5. Structure & Dataset Export for ML Engineers Save extracted predictions directly to a dataset (CSV/JSON), and export 3D .cif files for offline processing:

matgraph predict LiFePO4 --min-gap 2.0 --save dataset.csv --format csv --cif

Usage: The Modern GraphQL API

Integrate MatGraph into your own web applications seamlessly using our robust, async GraphQL engine.

Start the Server:

matgraph serve --port 8000

Navigate to http://localhost:8000/graphql to explore the interactive GraphiQL playground.

Example Query:

query {
  predictMaterial(formula: "NaCl", minGap: 1.0, limit: 3, model: "megnet") {
    materialId
    formula
    crystalSystem
    trueBandGap
    predictedBandGap
    trueFormEnergy
    predictedFormEnergy
    features {
      density
      numElements
      volume
    }
    metrics {
      modelName
      confidenceScore
    }
  }
}

Releases & Changelog

v0.3.x (Current - Multi-Property & MEGNet Update)

  • Feature: Implemented PyTorch MEGNet model (matgraph/megnet.py).
  • Feature: Support for Formation Energy predictions alongside Band Gap.
  • Feature: Added --model megnet flag and GraphQL model: "megnet" argument.
  • Feature: Integrated PyTorch architecture (CrystalGraphConvNet) replacing legacy dummy models.
  • Feature: Advanced CLI filtering (--min-gap, --max-gap, --crystal-system).
  • Feature: One-command dataset exporting (--save, --format).
  • Improvement: GraphQL schema modernized with detailed ModelMetrics and GraphQL pagination filters.

v0.1.x (Initial Release)

  • Initial end-to-end pipeline with MP-API fetching and basic feature extraction.
  • GraphQL Server & basic Typer CLI introduced.
  • Project migrated to uv build backend for maximum efficiency.

Contributing & Architecture

MatGraph is built on a robust, modern Python stack:

  • ML & Science: PyTorch, PyMatGen, Scikit-Learn, MP-API
  • API & CLI: FastAPI, Strawberry GraphQL, Typer, Rich
  • Packaging: uv (Hatchling)

We welcome contributions! To set up for local development:

git clone https://github.com/Himan-D/matgraph-cli.git
cd matgraph-cli
uv sync
uv run pytest

Please open an issue before submitting major pull requests.

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