MCP server for PharmaPendium data extraction — converts extraction results to XLSX, expands drug/concomitant rows, and uploads to Azure Blob Storage
Project description
mcp-server-pp
MCP server for PharmaPendium data extraction — converts extraction results to XLSX, expands drug/concomitant rows, and uploads to Azure Blob Storage.
Tools
save_extraction
Converts a JSON array of extraction results into an XLSX file, uploads it to Azure Blob Storage, and returns a download URL (valid 7 days).
If the user provided corrections or new rules during the extraction session, pass them in notes — they are saved as a separate Notes sheet inside the XLSX for traceability.
Parameters:
json_data(required): JSON array string — extraction results, one object per rowfile_name(optional): Output filename (with or without.xlsx). Defaults toextraction_results.xlsxnotes(optional): User corrections, comments, or new rules applied in this session
expand_concomitants
Takes an XLSX file with Drug Name and Concomitants columns, expands each row so every drug in the combined list gets its own row (rotating through the Drug Name slot while the rest fill Concomitants), uploads the result to Azure Blob Storage, and returns a download URL (valid 7 days).
Parameters:
xlsx_base64(required): Base64-encoded XLSX file contentfile_name(optional): Output filename (with or without.xlsx). Defaults toexpanded_results.xlsx
Example — one source row becomes three:
| Drug Name | Concomitants |
|---|---|
| DrugA | DrugB, DrugC |
→
| Drug Name | Concomitants |
|---|---|
| DrugA | DrugB, DrugC |
| DrugB | DrugA, DrugC |
| DrugC | DrugA, DrugB |
Required environment variable: AZURE_STORAGE_CONNECTION_STRING
Usage
With uvx (no installation needed)
uvx mcp-server-pp@1.1.3
MCP client config (e.g. Codemie, Claude Desktop)
{
"mcpServers": {
"pp-tools": {
"command": "uvx",
"args": ["mcp-server-pp@1.1.1"],
"env": {
"AZURE_STORAGE_CONNECTION_STRING": "${AZURE_STORAGE_CONNECTION_STRING}"
}
}
}
}
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