mcp-server-pp 1.2.0

MCP server for PharmaPendium data extraction — converts extraction results to XLSX, expands drug/concomitant rows, and uploads to Azure Blob Storage

mcp-server-pp

MCP server for PharmaPendium data extraction — converts extraction results to XLSX, expands drug/concomitant rows, and uploads to Azure Blob Storage.

Tools

save_extraction

Converts a JSON array of extraction results into an XLSX file, uploads it to Azure Blob Storage, and returns a download URL (valid 7 days).

If the user provided corrections or new rules during the extraction session, pass them in notes — they are saved as a separate Notes sheet inside the XLSX for traceability.

Parameters:

• json_data (required): JSON array string — extraction results, one object per row
• file_name (optional): Output filename (with or without .xlsx). Defaults to extraction_results.xlsx
• notes (optional): User corrections, comments, or new rules applied in this session

expand_concomitants

Takes a JSON array of rows (from the built-in Excel tool) with Drug Name and Concomitants columns and rotates each drug into the title slot. The Concomitants cell is parsed as CT-style free text: drugs separated by ;, each entry shaped as Name (aliases), route, dose, dose_comment, duration. For each input row, emits N+1 rows — the promoted drug's parsed metadata populates Drug Name, Route, Dose/Concentration, Dose Comment, and Treatment Duration; the displaced drugs are re-serialized back into Concomitants. All other columns are copied unchanged. Semicolons inside (...) and semicolons followed by non-drug continuations (digits, or/and, bare units) are preserved within a single drug's metadata; bare-name segments at the start of a chunk are merged as combination-drug components (e.g. Elexacaftor; Tezacaftor; Ivacaftor (ELX; TEZ; IVA), orally, ... stays one entry).

Parameters:

• json_data (required): JSON array string of row objects — read via the built-in Excel tool
• file_name (optional): Output filename (with or without .xlsx). Defaults to expanded_results.xlsx

Example — one source row becomes three:

Drug Name	Route	Dose/Concentration	Concomitants
DrugA	oral	10 mg	DrugB, i.v., 5 mg, daily; DrugC, oral, 20 mg, twice daily

→

Drug Name	Route	Dose/Concentration	Concomitants
DrugA	oral	10 mg	DrugB, i.v., 5 mg, daily; DrugC, oral, 20 mg, twice daily
DrugB	i.v.	5 mg	DrugA, oral, 10 mg; DrugC, oral, 20 mg, twice daily
DrugC	oral	20 mg	DrugA, oral, 10 mg; DrugB, i.v., 5 mg, daily

Required environment variable: AZURE_STORAGE_CONNECTION_STRING

Usage

With uvx (no installation needed)

uvx mcp-server-pp@1.2.0

MCP client config (e.g. Codemie, Claude Desktop)

{
  "mcpServers": {
    "pp-tools": {
      "command": "uvx",
      "args": ["mcp-server-pp@1.2.0"],
      "env": {
        "AZURE_STORAGE_CONNECTION_STRING": "${AZURE_STORAGE_CONNECTION_STRING}"
      }
    }
  }
}