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Temporal Knowledge Substrate MCP Server — domain-scoped knowledge accumulation with tool-enforced temporal integrity

Project description

Temporal Knowledge Substrate

An MCP server that lets LLM agents accumulate organizational knowledge across sessions, scoped by domain, backed by Neo4j. Tools enforce structural invariants so the graph can't corrupt itself — no raw Cypher writes.

Two-layer architecture:

  • Process layer (immutable) — Domains own Runs, Runs chain forward in time via NEXT_RUN. The arrow of time is enforced by the tool, not by instructions.
  • Knowledge layer (append-only) — 10 entity types (System, Process, Configuration, Gotcha, Rationale, etc.) connected by 7 relationship types. Knowledge evolves via EVOLVED_FROM chains — old versions are preserved, never overwritten.

Prerequisites

  • Python 3.10+
  • uv package manager
  • Neo4j 5.x instance (local or remote)

Quick Start

# Install
uv sync

# Run (stdio transport, default for MCP clients)
mcp-temporal-knowledge --db-url bolt://localhost:7687

Configuration

All options can be set via CLI flags or environment variables. CLI takes precedence.

CLI Flag Env Var Default Description
--db-url NEO4J_URI or NEO4J_URL bolt://localhost:7687 Neo4j connection URL
--username NEO4J_USERNAME neo4j Neo4j username
--password NEO4J_PASSWORD password Neo4j password
--database NEO4J_DATABASE neo4j Neo4j database name
--transport NEO4J_TRANSPORT stdio Transport: stdio, sse, or streamable-http
--namespace NEO4J_NAMESPACE (none) Tool name prefix (e.g. myapp -> myapp-begin_session)
--server-host NEO4J_MCP_SERVER_HOST 127.0.0.1 HTTP host (non-stdio transports)
--server-port NEO4J_MCP_SERVER_PORT 8000 HTTP port (non-stdio transports)
--server-path NEO4J_MCP_SERVER_PATH /mcp/ HTTP path (non-stdio transports)

MCP Client Configuration

Claude Desktop / Claude Code

Add to your MCP config:

{
  "mcpServers": {
    "temporal-knowledge": {
      "command": "mcp-temporal-knowledge",
      "args": ["--db-url", "bolt://localhost:7687"]
    }
  }
}

HTTP transport

mcp-temporal-knowledge \
  --db-url bolt://localhost:7687 \
  --transport streamable-http \
  --server-host 0.0.0.0 \
  --server-port 8000 \
  --allow-origins "http://localhost:3000" \
  --allowed-hosts "localhost,127.0.0.1"

Tool Surface (20 tools)

Session workflow

Every session follows: create_domain (once) -> begin_session -> create/evolve/confirm knowledge -> end_session

Tool Description
list_domains List all domains with run counts and last activity
create_domain Create a knowledge domain (idempotent)
begin_session Start a session — returns run_id needed by all knowledge tools
end_session Close a session with a summary of what was learned

Knowledge mutation

Tool Description
create_knowledge Create entities (System, Gotcha, Rationale, etc.) linked to the current session
evolve_knowledge Create a new version of an entity — old version preserved via EVOLVED_FROM
confirm_knowledge Record that entities were reviewed and found unchanged
create_connections Link entities (ENABLING, REQUIRING, CAUSING, etc.)

Querying

Tool Description
search_knowledge Fulltext search across names and descriptions
get_domain_state All current (head-of-chain) entities for a domain
get_run_history Session history — who worked on what, when
read_cypher Read-only Cypher escape hatch (writes rejected)

Taxonomy & Analytics

Tool Description
list_knowledge_types The 10 entity types with descriptions
list_connection_types The 7 knowledge + 4 process edge types
gds_create_projection Create a GDS graph projection for analytics
gds_drop_projection Drop a GDS projection
gds_pagerank PageRank centrality
gds_betweenness Betweenness centrality (bridge nodes)
gds_louvain Louvain community detection
gds_wcc Weakly connected components

Development

# Install with dev dependencies
uv sync --dev

# Run tests
uv run pytest

# Type checking
uv run pyright

See HOWTO.xml for the ontological commitments and the tools' behavior. Provide this to the LLM as invariant scaffolding.

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