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Defense Finder: allow for a systematic search of all known anti-phage systems.

Project description

Defense Finder

A cli utility enabling systematic search of all anti-phage systems in proteins using MacSyData and Mdm labs models.



The cli logic, using click.


The defense finder logic, calling macsydata with the models.


Updates the defense-finder models. Called during post-install and anytime later on.


A Github action is setup to trigger a package release everytime a tagged commit is pushed.

Note that you don't need to publish defense-finder everytime the models change: only changes in this repository are relevant.

Here are the steps to follow in order to publish defense-finder:

  • find the current version in the setup function of
  • get a new version number according to semantic versionning
  • update the version un
  • commit this change, and tag the commit with git tag -a v<your version number> -m '<your version number> <an optional message>'
  • push your commits to master
  • run git push origin v<your version> to sync the tags
  • wait for the Github actions task to complete.
  • all set! install the new version with pip install mdmparis-defense-finder==v<your-version>

Project details

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