Code to process merfish data
Project description
Introduction
MERMAKE is a the backend for the MERFISH+ line of spatial transcriptomics.
To install MERMAKE,
python3 -m pip install mermake
or
git clone https://github.com/deprekate/MERMAKE.git
pip install MERMAKE/.
MERMAKE Example
The final full gui interface is currently still in development, but a sample worker script is included in the github repo. All of the data paths and hyper parameters are hardcoded in the worker.py script, and will need to be adjusted to fit your environment.
Some of the variables to set are:
- psf
- flat field
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