Code to process merfish data
Project description
Introduction
MERMAKE is a the backend for the MERFISH+ line of spatial transcriptomics.
To install MERMAKE,
python3 -m pip install mermake
or
git clone https://github.com/deprekate/MERMAKE.git
pip install MERMAKE/.
MERMAKE Example
The final full gui interface is currently still in development, but a sample worker script is included in the github repo. All of the data paths and hyper parameters are hardcoded in the worker.py script, and will need to be adjusted to fit your environment.
Some of the variables to set are:
- psf
- flat field
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file mermake-0.0.45.tar.gz.
File metadata
- Download URL: mermake-0.0.45.tar.gz
- Upload date:
- Size: 46.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.0.1 CPython/3.10.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
80e639a6fd009f1ac41cad765a8b266cb00300ec75ee5ab6bca70b4257de08b6
|
|
| MD5 |
61fd2a0459a1a058ba16a2fb67b974c5
|
|
| BLAKE2b-256 |
6ef973f5f3cfd6bcf27eeab084c1dcf096c1ad69cacf90ddda5f47c7a3773d8a
|
File details
Details for the file mermake-0.0.45-py3-none-any.whl.
File metadata
- Download URL: mermake-0.0.45-py3-none-any.whl
- Upload date:
- Size: 49.3 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.0.1 CPython/3.10.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
b7b9d8973bff1496a60c7d5009b3c62c509bb66442eaaa3c749ae0ad89966e4e
|
|
| MD5 |
deb5c5fb8a84e1a32220f61547b2183e
|
|
| BLAKE2b-256 |
b2861ad08258d4bf9f2061c9741a7b80ada066a988e1ababee2eaf2d05f3fec8
|
