Analyze FT-ICR-MS data
Project description
MetaboDirect
MetaboDirect is a comprehensive pipeline for the analysis of Direct Injection Mass Spectrometry (DI-MS) data.
Installation
Metabodirect can be obtaining by cloning this repository
git clone https://github.com/Coayala/MetaboDirect.git
MetaboDirect requires Python (3.5 and above), R (4 and above) and Cytoscape (3.8 and above) with the following libraries/modules:
Python
- argparse
- numpy
- pandas
- seaborn
- more-itertools
- py4cytoscape
R
- tidyverse
- RColorBrewer
- vegan
- ggnewscale
- ggpubr
- vegan
- KEGGREST
- factoextra
- UpSetR
- pmartR (for normalization tests)
Cytoscape
- FileTransfer
Usage
Information about the arguments can be obtaining using the option -h/--help
./run_metabodirect.py -h
For more information please check the User Manual.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
metabodirect-0.1.1.tar.gz
(3.2 MB
view hashes)
Built Distribution
Close
Hashes for metabodirect-0.1.1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | ada2cbcc29045137dab820087eaf659e629110a3a1727131c4bf35f89ce08596 |
|
MD5 | ea94523714b70b453bb6b63d30ca8551 |
|
BLAKE2b-256 | 2b2fdc0961aaabbba4407506a0058ceee5754a0eeb49ab9820ff59d600bce1f4 |