metalo

MetaLo is a framework for the metabolic analysis (FBA) of Logical models extracted automatically from detailed mechanistic maps. See this published article for more details.

Install

Metalo is provided as a Python3 package, you can install it from the Python package index with pip, conda or your Python package manager of choice:

$ python3 -m pip install metalo

Command-line usage

Just follow the instructions:

$ metalo --help

 usage: metalo [-h] [-v] [-D] [-i INIT] MAP METABOLISM

 Hybrid Framework. Copyright (C) 2023 Sahar.Aghakhani@inria.fr and Sylvain.Soliman@inria.fr GPLv3

 positional arguments:
   MAP                   CellDesigner file containing the mechanistic map
   METABOLISM            MitoCore style metabolic model

 optional arguments:
   -h, --help            show this help message and exit
   -v, --version         show program's version number and exit
   -D, --debug           Display some debug information
   -i INIT, --init INIT  CSV file with forced initial values for the Logic model

Development Status
- 4 - Beta
License
- OSI Approved :: GNU General Public License v3 (GPLv3)
Operating System
- OS Independent
Programming Language
- Python :: 3

Release files for metalo 0.1.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for metalo 0.1.0
File	Size	Uploaded
metalo-0.1.0.tar.gz	15.8 kB	Feb 22, 2023	Details

Built distribution (wheel)

Table of built distributions (wheels) for metalo 0.1.0
File	Interpreter	ABI	Platform	Reset
metalo-0.1.0-py3-none-any.whl 16.8 kB Feb 22, 2023	Python 3	none	any	Details

Total release size: 32.6 kB

Release files / metalo-0.1.0.tar.gz

Download URL	metalo-0.1.0.tar.gz
Size	15.8 kB
Tags	Source
SHA-256 checksum How to use checksums	`34fd3cb6dc72563192ac8cf6c923010b6e0157b76e5f3d89a4cd47b82e804ccf`
BLAKE2b-256 checksum How to use checksums	`8596fc237cbde32d1afc5eabd11191e84abd541c426fcd7e377d290d09da1beb`
Upload date	Feb 22, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`python-httpx/0.23.3`

Release files / metalo-0.1.0-py3-none-any.whl

Download URL	metalo-0.1.0-py3-none-any.whl
Size	16.8 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`de4d1d1e00eaea2c4db054c85976a936ca27c090c0be43de44bb062a07b20219`
BLAKE2b-256 checksum How to use checksums	`fad1eaa8140fd01221d606967ce83a974e17dc13baf206ad0458609cd337fb1c`
Upload date	Feb 22, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`python-httpx/0.23.3`