metalo 0.1.0

Newly Frameworking

MetaLo is a framework for the metabolic analysis (FBA) of Logical models extracted automatically from detailed mechanistic maps. See this published article for more details.

Install

Metalo is provided as a Python3 package, you can install it from the Python package index with pip, conda or your Python package manager of choice:

$ python3 -m pip install metalo

Command-line usage

Just follow the instructions:

$ metalo --help

 usage: metalo [-h] [-v] [-D] [-i INIT] MAP METABOLISM

 Hybrid Framework. Copyright (C) 2023 [e-mail] and [e-mail] GPLv3

 positional arguments:
   MAP                   CellDesigner file containing the mechanistic map
   METABOLISM            MitoCore style metabolic model

 optional arguments:
   -h, --help            show this help message and exit
   -v, --version         show program's version number and exit
   -D, --debug           Display some debug information
   -i INIT, --init INIT  CSV file with forced initial values for the Logic model