mhctyper
Polars-accelerated MHC class I and II typing based on Polysolver algorithm.
Features
- Supports both class I and II typing with good accuracy
- Runtime speedup boosted by polars
- Minimum I/O operations
- Easy integration to workflow/pipeline with better CLI and proper packaging.
Installation
mhctyper can be installed from PyPI:
pip install mhctyper
Quick start
mhctyper simply requires 2 inputs:
- Alignment to HLA alleles in BAM format:
$bam. - Population frequency from the original
polysolver:HLA_FREQ.txt.
mhctyper --bam "$bam" \
--freq "HLA_FREQ.txt" \
--outdir "$outdir" \
--nproc 8
Please refer to documentation for more details.
1 maintainer
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