mhctyper
Polars-accelerated MHC class I and II typing based on Polysolver algorithm.
Features
- Supports both class I and II typing with good accuracy
- Runtime speedup boosted by polars
- Minimum I/O operations
- Easy integration to workflow/pipeline with better CLI and proper packaging.
Installation
mhctyper can be installed from PyPI:
pip install mhctyper
Quick start
mhctyper simply requires 2 inputs:
- Alignment to HLA alleles in BAM format:
$bam. - Population frequency from the original
polysolver:HLA_FREQ.txt.
mhctyper --bam "$bam" \
--freq "HLA_FREQ.txt" \
--outdir "$outdir" \
--nproc 8
Please refer to documentation for more details.
1 maintainer
Metadata
1 maintainer
Release files for mhctyper 0.1.9
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Source distribution (sdist)
| File | Size | Uploaded | |
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| mhctyper-0.1.9.tar.gz | 10.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| mhctyper-0.1.9-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 21.7 kB
Release files / mhctyper-0.1.9.tar.gz
| Download URL | mhctyper-0.1.9.tar.gz |
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| Size | 10.2 kB |
| Tags | Source |
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| Tags | Python 3 |
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twine/6.1.0 CPython/3.13.7
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