MetabolomicsHub Common Data Model
Project description
MetabolomicsHub Common Data Model and Utility Tools (mhd-model)
You can find documentation on Github
Development Environment
Development environment for linux or mac
# install python package manager uv
curl -LsSf https://astral.sh/uv/install.sh | sh
# add $HOME/.local/bin to your PATH, either restart your shell or run
export PATH=$HOME/.local/bin:$PATH
# install git from https://git-scm.com/downloads
# Linux command
apt update; apt install git -y
# Mac command
# brew install git
# clone project from github
git clone https://github.com/MetabolomicsHub/mhd_model.git
cd mhd-model
# install python if it is not installed
uv python install 3.12
# install python dependencies
uv sync
# install pre-commit to check repository integrity and format checking
uv run pre-commit
# open your IDE (vscode, pycharm, etc.) and set python interpreter as .venv/bin/python
Commandline Usage
# you can use any python version >= 3.12
pip install mhd-model
mhd-cli
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