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A deep learning model for microenvironment estimation based on spatial transcriptomics

Project description

mievformer

mievformer is a Python package for nicheformer analysis, providing tools for spatial transcriptomics data analysis, including niche modeling, cell-cell interaction estimation, and visualization.

Installation

pip install mievformer

Documentation

For detailed usage instructions, tutorials, and API reference, please visit the documentation:

https://kojikoji.github.io/mievformer_package/index.html

License

MIT License

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