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Project description
MirCAT-v2
Mirshahi-Lab CT Analysis Toolkit (MirCAT). Convert dicoms, segment niftis, extract data.
V1 has been archived. This version is almost a full rewrite of the segmentation section, specifically to incorporate nnUNet models directly into the pipeline.
NOTES
When using docker -> make sure to add the --ipc=host flag or segmentation will not work
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