Transforms to map between different mouse (template) brains
Project description
navis-mousebrains
Transforms and meta data to map between different mouse template brains. This package is intended to be used with navis and is analogous to navis-flybrains.
Currently mousebrains ships with:
- meta data and surface meshes the Allen CCF mouse brain template
Installation
You can install mousebrains from PyPI:
pip3 install mousebrains
To install the dev version from Github:
pip3 install git+https://github.com/navis-org/navis-mousebrains.git
External dependencies
In order to use CMTK-based transforms, you will need to have CMTK installed.
For the Elastix-based transforms, you will need to download
elastix and make sure that the path
to the binaries is in your PATH variable.
Usage
TODO
Changes
TODO
Acknowledgements
TODO
Citing
TODO
When in doubt, feel free to open an issue to ask for advice.
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