26 projects
sea-serpent
Dataframe-like wrapper for SeaTable API.
connecto
Unified interface for querying connectomes.
navis-fastcore
NAVis core functions reimplemented in Rust.
rcpd
Coherent point drift: registering point clouds with no correspondences given.
fricp
Fast and Robust Iterative Closest Point (FRICP) — rigid registration of 3-D point sets, in Rust
sparse-cubes
Fast, memory-efficient operations on sparse (N, 3) voxel data: meshing, voxelization, morphology, thinning and skeletonization
python-catmaid
Python interface to CATMAID servers
dijkstra3d-sparse
Dijkstra shortest paths, distance fields and connected components over sparse (N, 3) voxel sets
octarine3d
WGPU-based 3d viewer
octarine-navis-plugin
Octarine plugin to visualize NAVis data in 3D.
fishbrains
Transforms to map between different fish (template) brains
acdc-search
AC/DC search - alternating continuous and discrete combinatorial graph matching
skeletor
Python 3 library to extract skeletons from 3D meshes
bigclust2
A graphical interface for interactively exploring clusterings of high-dimensional connectomic data
shull
Fast sweep-hull (S-hull) Delaunay triangulation, plus alpha shapes (concave hulls), in 2D and 3D, implemented in Rust
aann
Approximate all-nearest-neighbor search using neighborhood graphs, implemented in Rust with Python bindings.
clio-py
Python client utilities for interacting with the Clio platform
nglscenes
Tools to generate and manipulate neuroglancer scenes
navis
Neuron Analysis and Visualization library
dvidtools
Fetch data from DVID server
fafbseg
Tools to work with the FlyWire and Google segmentations of the FAFB EM dataset
cmtk-apply
Python library to read and apply CMTK transformations (affine and spline warps)
mousebrains
Transforms to map between different mouse (template) brains
flybrains
Transforms to map between different Drosophila template brains
xform
Library for transforming data
tanglegram
Plot simple tanglegrams from two dendrograms
