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Neuron Analysis and Visualization Library

Project description

NAVis is a Python 3 library for Neuron Analysis and Visualization with focus on hierarchical tree-like neuron data.

Features:

  • interactive 2D (matplotlib) and 3D (vispy/plotly) plotting of neurons
  • virtual neuron surgery: cutting, pruning, rerooting
  • clustering methods (e.g. by connectivity or synapse placement)
  • R bindings (e.g. for libraries nat, rcatmaid, elmr)
  • interfaces with Blender 3D and Cytoscape

Check out the Documentation.

Project details


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