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Neuron Analysis and Visualization library

Project description

NAVis is a Python 3 library for analysis and visualization of neuron morphology.

Features include:

  • work with various neuron types: skeletons, meshes, dotprops
  • 2D (matplotlib) and 3D (vispy or plotly) plotting
  • virtual neuron surgery: cutting, stitching, pruning, rerooting, etc
  • analyze morphology (e.g. NBLAST) and connectivity
  • transform neurons between template brains
  • load neurons directly from neuPrint and neuromorpho.org
  • interface with Blender 3D
  • interface with R neuron libraries (e.g. nat, nat.nblast and elmr)
  • import-export from/to SWC
  • designed to be extensible - see for example pymaid

Check out the Documentation.

Project details


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