Skip to main content

To convert multiple alignment sequences (msa) to different format

Project description

msaconverter

1 Introduction

msaconverter is a tool to convert a multiple sequence alignment into different format with Biopython (http://www.biopython.org/)

2 Installation

pip install msaconverter

There will be a command msaconverter created under the same directory as your pip command.

3 Usage

$ msaconverter usage: msaconverter.py [-h] [-i <INFILE>] [-o <OUTFILE>] [-p {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}] [-q {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}]

Convert multiple-sequence-alignment into different formats. See https://biopython.org/wiki/AlignIO for format introductions. By Guanliang MENG.

optional arguments: -h, --help show this help message and exit -i <INFILE> input msa file -o <OUTFILE> output msa file -p {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf} input msa format [fasta] -q {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf} input msa format [phylip-relaxed]

Author

Guanliang MENG

Citation

Currently I have no plan to publish msaconverter.

However, since msaconverter makes use of Biopython, you should cite it if you use msaconverter in your work:

Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon: “Biopython: freely available Python tools for computational molecular biology and bioinformatics”. Bioinformatics 25 (11), 1422–1423 (2009). https://doi.org/10.1093/bioinformatics/btp163

Please go to http://www.biopython.org/ for more details.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for msaconverter, version 0.0.1
Filename, size File type Python version Upload date Hashes
Filename, size msaconverter-0.0.1.tar.gz (16.1 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page