nPYc 2.0

National Phenome Centre toolbox

	Toolbox for preprocessing of metabolic profiling datasets
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	The nPYc toolbox offers functions for the import, preprocessing, and QC of metabolic profiling datasets.

	Documentation can be found on `Read the Docs <http://npyc-toolbox.readthedocs.io/en/latest/?badge=latest>`_.

	Imports
	 - Peak-picked LC-MS data (XCMS, Progenesis QI, *&* Metaboscape)
	 - Raw NMR spectra (Bruker format)
	 - Targeted datasets (TargetLynx, Bruker BI-LISA, *&* BI-Quant-Ur)

	Provides
	 - Batch *&* drift correction for LC-MS datasets
	 - Feature filtering by RSD *&* linearity of response
	 - Calculation of spectral line-width in NMR
	 - PCA of datasets
	 - Visualisation of datasets

	Exports
	 - Basic tabular csv
	 - `ISA-TAB <http://isa-tools.org>`_

	The nPYc toolbox is `developed <https://github.com/phenomecentre/npyc-toolbox>`_ by the informatics team at `The National Phenome Centre <http://phenomecentre.org/>`_ at `Imperial College London <http://imperial.ac.uk/>`_.