Create fastQC-like plots for Oxford Nanopore sequencing data
Quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC. This is an immature tool and I welcome all contributions.
pip install nanoQC
conda install -c bioconda nanoqc
nanoQC [-h] [-v] [-o OUTDIR] fastq positional arguments: fastq Reads data in fastq.gz format. optional arguments: -h, --help show this help message and exit -v, --version Print version and exit. -o, --outdir OUTDIR Specify directory in which output has to be created. -l, --minlen int Minimum length of reads to be included in the plots This also controls the length plotted in the graphs from the beginning and end of reads (length plotted = minlen / 2)
If you use this tool, please consider citing our publication.
- Jasper Ouwerkerk (JasperO98) for improving how reads are selected (v0.8.0)
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