nanoQC 0.6.0

Create fastQC-like plots for Oxford Nanopore sequencing data

Quality control tools for Oxford Nanopore sequencing data aiming to replicate some of the plots made by fastQC.

Creates dynamic plots using bokeh. For a static example see my blog Gigabase or gigabyte

INSTALLATION

pip install nanoQC

or

conda install -c bioconda nanoqc

USAGE

nanoQC [-h] [-v] [--outdir OUTDIR] fastq

positional arguments:
  fastq            Reads data in fastq format.

optional arguments:
  -h, --help       show this help message and exit
  -v, --version    Print version and exit.
  -o, --outdir     Specify directory in which output has to be created.

STATUS