napari-bioformats 0.1.1

Bioformats for napari, using pims

napari-bioformats

Bioformats plugin for napari using pims-bioformats

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Installation

The easiest way to install napari-bioformats is via conda, from the conda-forge channel:

conda install -c conda-forge napari-bioformats

It is also possible to install via pip, but you will need to have a working JVM installed, and may need to set the JAVA_HOME environment variable

pip install napari-bioformats

First Usage

The first time you attempt to open a file with napari-bioformats, you will likely notice a long delay as pims downloads the loci_tools.jar (speed will depend on your internet connection). Subsequent files should open more quickly.

License

Distributed under the terms of the BSD-3 license, "napari-bioformats" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

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