Visualise brainreg registration output in standard space
Project description
napari-brainreg-standard
Visualise brainreg registration output in napari
Based on the napari cookiecutter plugin template and napari-ndtiffs by @tlambert03
Installation
Assuming you already have napari installed, you can install napari-brainreg-standard via pip:
pip install napari-brainreg-standard
Usage
Open napari and drag your brainreg output directory (the one with the log file) onto the napari window.
Various images should then open, including:
Image (downsampled)- the image used for registrationAnnotations- the atlas labels
If you downsampled additional channels, these will also be loaded.
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