napari-correct-drift
Napari-correct-drift brings the functionality of Fiji’s popular Correct-3D-drift macro to Napari for flexible and efficient correction of stage and sample drift common in time-lapse microscopy.
Napari-correct-drift supports drift correction for 2D/3D multi-channel data.
Example
https://user-images.githubusercontent.com/895863/235100349-83379350-06a5-4fe7-9323-f3e5771cca2e.mp4
Test data
Napari-correct-drift contains synthetic sample data. To test it on real data download an example Arabidopsis growing root tip file.
Installation
You can install napari-correct-drift via [pip]:
pip install napari-correct-drift
To install latest development version :
pip install git+https://github.com/sommerc/napari-correct-drift.git
Roadmap
- Basic CorrectDrift interface
- Synthetic test data
- Unit tests
- 2D/3D multi-channel support
- ROI support (rectangles)
- Saving and loading of drift tables
- Outlier handling
- Sphinx documentation
- How-tos
- Tutorials and Guides
Contributing
Contributions are very welcome. Tests can be run with [tox], please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the [BSD-3] license, "napari-correct-drift" is free and open source software
Acknowledgment
This project has been made possible in part by grant number NP2-0000000051 from the napari Plugin Foundations Grants (Cycle 2).
1 maintainer
Metadata
1 maintainer
Release files for napari-correct-drift 0.4.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari_correct_drift-0.4.1.tar.gz | 19.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_correct_drift-0.4.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 38.7 kB
Release files / napari_correct_drift-0.4.1.tar.gz
| Download URL | napari_correct_drift-0.4.1.tar.gz |
|---|---|
| Size | 19.1 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / napari_correct_drift-0.4.1-py3-none-any.whl
| Download URL | napari_correct_drift-0.4.1-py3-none-any.whl |
|---|---|
| Size | 19.6 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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