napari-cupy-image-processing
GPU-accelerated image processing using cupy and CUDA
Usage
This napari plugin adds some menu entries to the Tools menu. You can recognize them with their suffix (n-cupy) in brackets.
Furthermore, it can be used from the napari-assistant graphical user interface.
Therefore, just click the menu Tools > Utilities > Assistant (na) or run naparia from the command line.
You can also call operations from python, e.g. as shown in this demo notebook.
Installation
You can install napari-cupy-image-processing using conda:
mamba install -c conda-forge cupy cudatoolkit=11.2 napari-cupy-image-processing
Troubleshooting installation
In case of issues, follow the instructions for installing cupy.
A more detailed example for installation (change 11.2 to your desired CUDA version):
mamba create --name cupy_p39 python=3.9
conda activate cupy_p39
And then:
mamba install -c conda-forge cupy cudatoolkit=11.2 napari-cupy-image-processing
Contributing
Contributions are very welcome. Adding cupy ndimage functions is quite easy as you can see in the implementation of the current operations. If you need another function in napari, just send a PR. Please make sure the tests pass locally before submitting a PR.
pip install pytest-cov pytest-qt
pytest --cov=napari_cupy_image_processing
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
License
Distributed under the terms of the MIT license, "napari-cupy-image-processing" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
1 maintainer
Metadata
1 maintainer
Release files for napari-cupy-image-processing 0.4.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari-cupy-image-processing-0.4.1.tar.gz | 10.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_cupy_image_processing-0.4.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 21.1 kB
Release files / napari-cupy-image-processing-0.4.1.tar.gz
| Download URL | napari-cupy-image-processing-0.4.1.tar.gz |
|---|---|
| Size | 10.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.9.16
|
Release files / napari_cupy_image_processing-0.4.1-py3-none-any.whl
| Download URL | napari_cupy_image_processing-0.4.1-py3-none-any.whl |
|---|---|
| Size | 10.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.9.16
|
