This release is a pre-release and may not be stable for production use.
napari-denoiseg
A napari plugin performing joint denoising and segmentation of microscopy images using DenoiSeg.
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Installation
Check out the documentation for more detailed installation instructions.
Quick demo
You can try out a demo by loading the DenoiSeg Demo prediction plugin and directly clicking on Predict.
Documentation
Documentation is available on the project website.
Contributing and feedback
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request. You can also help us improve by filing an issue along with a detailed description or contact us through the image.sc forum (tag @jdeschamps).
Cite us
Tim-Oliver Buchholz, Mangal Prakash, Alexander Krull and Florian Jug, "DenoiSeg: Joint Denoising and Segmentation" arxiv (2020)
Acknowledgements
This plugin was developed thanks to the support of the Silicon Valley Community Foundation (SCVF) and the Chan-Zuckerberg Initiative (CZI) with the napari Plugin Accelerator grant 2021-239867.
Distributed under the terms of the BSD-3 license, "napari-denoiseg" is a free and open source software.
1 maintainer
Metadata
1 maintainer
Release files for napari-denoiseg 0.0.1rc2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari-denoiseg-0.0.1rc2.tar.gz | 53.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_denoiseg-0.0.1rc2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 119.1 kB
Release files / napari-denoiseg-0.0.1rc2.tar.gz
| Download URL | napari-denoiseg-0.0.1rc2.tar.gz |
|---|---|
| Size | 53.1 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.8
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Release files / napari_denoiseg-0.0.1rc2-py3-none-any.whl
| Download URL | napari_denoiseg-0.0.1rc2-py3-none-any.whl |
|---|---|
| Size | 66.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.8
|
