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extracts image and object features

Project description

napari-features

License PyPI Python Version tests codecov

An extensible, general-purpose feature extraction plug-in for the Napari image viewer.

Features

Color

Image

color_image_integrated_intensity
color_image_maximum_intensity
color_image_mean_intensity
color_image_median_absolute_deviation_intensity
color_image_median_intensity
color_image_minimum_intensity
color_image_quantile_1_intensity
color_image_quantile_3_intensity
color_image_standard_deviation_intensity

Object

color_object_center_mass_intensity_x
color_object_center_mass_intensity_y
color_object_integrated_intensity
color_object_integrated_intensity_edge
color_object_mass_displacement
color_object_maximum_intensity
color_object_maximum_intensity_edge
color_object_maximum_intensity_x
color_object_maximum_intensity_y
color_object_mean_intensity
color_object_mean_intensity_edge
color_object_median_absolute_deviation_intensity
color_object_median_intensity
color_object_median_intensity_edge
color_object_minimum_intensity
color_object_minimum_intensity_edge
color_object_quantile_1_intensity
color_object_quantile_1_intensity_edge   
color_object_quantile_3_intensity
color_object_quantile_3_intensity_edge
color_object_standard_deviation_intensity
color_object_standard_deviation_intensity_edge
Object distribution
color_object_distribution_coefficient_of_variation_intensity
color_object_distribution_integrated_intensity
Color_object_distribution_mean_intensity

Location

Object neighborhood

location_object_neighborhood_angle
location_object_neighborhood_closest_0_distance
location_object_neighborhood_closest_0_object_index
location_object_neighborhood_closest_1_distance
location_object_neighborhood_closest_1_object_index
location_object_neighborhood_closest_2_distance
location_object_neighborhood_closest_2_object_index
location_object_neighborhood_neighbors
location_object_neighborhood_touching

Metadata

Image

metadata_image_checksum
metadata_image_filename

Layer

metadata_layer_name
metadata_layer_type

Object

metadata_object_index

Shape

Image

shape_image_area

Image skeleton

shape_image_skeleton_branches
shape_image_skeleton_endpoints
shape_image_skeleton_length
shape_image_skeleton_trunks

Object

shape_object_area
shape_object_bounding_box_area
shape_object_bounding_box_maximum_x
shape_object_bounding_box_maximum_y
shape_object_bounding_box_maximum_z
shape_object_bounding_box_minimum_x
shape_object_bounding_box_minimum_y
shape_object_bounding_box_minimum_z
shape_object_bounding_box_volume
shape_object_central_moment_0_0_0
shape_object_central_moment_0_0_1
shape_object_central_moment_0_1_2
shape_object_central_moment_0_1_3
shape_object_central_moment_1_2_0
shape_object_central_moment_1_2_1
shape_object_central_moment_1_3_2
shape_object_central_moment_1_3_3
shape_object_central_moment_2_0_0
shape_object_central_moment_2_0_1
shape_object_central_moment_2_1_2
shape_object_central_moment_2_1_3
shape_object_central_moment_3_2_0
shape_object_central_moment_3_2_1
shape_object_central_moment_3_3_2
shape_object_central_moment_3_3_3
shape_object_centroid_x
shape_object_centroid_y
shape_object_centroid_z
shape_object_compactness
shape_object_eccentricity
shape_object_equivalent_diameter
shape_object_euler_number
shape_object_extent
shape_object_form_factor
shape_object_hu_moment_0
shape_object_hu_moment_1
shape_object_hu_moment_2
shape_object_hu_moment_3
shape_object_hu_moment_4
shape_object_hu_moment_5
shape_object_hu_moment_6
shape_object_inertia_tensor_eigenvalues_x
shape_object_inertia_tensor_eigenvalues_y
shape_object_inertia_tensor_eigenvalues_z
shape_object_inertia_tensor_x_x
shape_object_inertia_tensor_x_y
Shape_object_inertia_tensor_x_z
shape_object_inertia_tensor_y_x
shape_object_inertia_tensor_y_y
shape_object_inertia_tensor_y_z
shape_object_inertia_tensor_z_x
shape_object_inertia_tensor_z_y
shape_object_inertia_tensor_z_z
shape_object_major_axis_length
shape_object_maximum_feret_diameter
shape_object_maximum_radius
shape_object_mean_radius
shape_object_median_radius
shape_object_minimum_feret_diameter
shape_object_minor_axis_length
shape_object_normalized_moment_x_y
shape_object_orientation
shape_object_perimeter
shape_object_solidity
shape_object_spatial_moment_0_0_0
shape_object_spatial_moment_0_0_1
shape_object_spatial_moment_0_1_2
shape_object_spatial_moment_0_1_3
shape_object_spatial_moment_1_2_0
shape_object_spatial_moment_1_2_1
shape_object_spatial_moment_1_3_2
shape_object_spatial_moment_1_3_3
shape_object_spatial_moment_2_0_0
shape_object_spatial_moment_2_0_1
shape_object_spatial_moment_2_1_2
shape_object_spatial_moment_2_1_3
shape_object_spatial_moment_3_2_0
shape_object_spatial_moment_3_2_1
shape_object_spatial_moment_3_3_2
shape_object_spatial_moment_3_3_3
shape_object_surface_area
shape_object_volume
shape_object_zernike shape features
Object skeleton
shape_object_skeleton_endpoints
shape_object_skeleton_branches
shape_object_skeleton_length
shape_object_skeleton_trunks

Texture

Object

texture_object_haralick_angular_second_moment
texture_object_haralick_contrast
texture_object_haralick_coorelation
texture_object_haralick_sum_of_squares_variance
texture_object_haralick_inverse_difference_moment
texture_object_haralick_sum_average
texture_object_haralick_sum_variance
texture_object_haralick_sum_entropy
texture_object_haralick_entropy
texture_object_haralick_difference_variance
texture_object_haralick_measure_of_correlation_0
texture_object_haralick_measure_of_correlation_1
texture_object_haralick_maximum_correlation_coefficient

Project details


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