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create an overlap labels layer from two labels layers

Project description

napari-labels-overlap

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create an overlap labels layer from two labels layers

Description

This plugin takes two labels layers (layerA, layerB) as inputs, and generate the overlapped regions as a binary labels layer. Three modes:
(1) A_OR_B: new layer = layerA OR layerB (union)
(2) A_AND_B: new layer = layerA AND layerB (intersection)
(3) A_OUTSIDE_B: new layer = layerA OUTSIDE layerB (complement)

labels_overlap

Applicaions

  • Object colocalization
  • Merge separately identified objects

Future work

  • Support N labels layers
  • Basic coloc stats (% volume overlap)
  • Output Labels with distinct IDs and links to original label IDs

Release log

  • 0.0.2
    -- Run on npe2
    -- Add output types: binary/connected component
  • 0.0.1
    -- Run on npe1

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-labels-overlap via pip:

pip install napari-labels-overlap

To install latest development version :

pip install git+https://github.com/chili-chiu/napari-labels-overlap.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-labels-overlap" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Project details


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Source Distribution

napari-labels-overlap-0.0.3.tar.gz (5.7 kB view hashes)

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