napari-molecule-reader
A napari plugin that read molecular structure files. It reads PDB and MMCIF files using atomium, expanding molecular assemblies to a full visualization. Data is loaded into napari as Points for ball representation and Vectors for stick representation. If multiple models or assemblies are detected, they will be loaded as separate objects.
TODO list:
- [] handle alternate locations (i.e: different conformations in the same pdb model)
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-molecule-reader via pip:
pip install napari-molecule-reader
To install latest development version :
pip install git+https://github.com/brisvag/napari-molecule-reader.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-molecule-reader" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
1 maintainer
Metadata
1 maintainer
Release files for napari-molecule-reader 0.1.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari_molecule_reader-0.1.4.tar.gz | 51.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_molecule_reader-0.1.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 84.8 kB
Release files / napari_molecule_reader-0.1.4.tar.gz
| Download URL | napari_molecule_reader-0.1.4.tar.gz |
|---|---|
| Size | 51.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.3
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Release files / napari_molecule_reader-0.1.4-py3-none-any.whl
| Download URL | napari_molecule_reader-0.1.4-py3-none-any.whl |
|---|---|
| Size | 33.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.3
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