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A napari plugin that read molecular structure files.

Project description

napari-molecule-reader

License PyPI Python Version tests codecov napari hub

A napari plugin that read molecular structure files. It reads PDB and MMCIF files using atomium, expanding molecular assemblies to a full visualization. Data is loaded into napari as Points for ball representation and Vectors for stick representation. If multiple models or assemblies are detected, they will be loaded as separate objects.

https://user-images.githubusercontent.com/23482191/150109390-bd7fb3b4-79b4-43da-aafc-20921714df25.mp4

TODO list:

  • [] handle alternate locations (i.e: different conformations in the same pdb model)

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-molecule-reader via pip:

pip install napari-molecule-reader

To install latest development version :

pip install git+https://github.com/brisvag/napari-molecule-reader.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-molecule-reader" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Project details


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Source Distribution

napari-molecule-reader-0.1.2.tar.gz (14.4 kB view hashes)

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