A napari plugin that read molecular structure files.
Project description
napari-molecule-reader
A napari plugin that read molecular structure files. It reads PDB and MMCIF files using atomium, expanding molecular assemblies to a full visualization. Data is loaded into napari as Points for ball representation and Vectors for stick representation. If multiple models or assemblies are detected, they will be loaded as separate objects.
TODO list:
- [] handle alternate locations (i.e: different conformations in the same pdb model)
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-molecule-reader via pip:
pip install napari-molecule-reader
To install latest development version :
pip install git+https://github.com/brisvag/napari-molecule-reader.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-molecule-reader" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file napari_molecule_reader-0.1.4.tar.gz.
File metadata
- Download URL: napari_molecule_reader-0.1.4.tar.gz
- Upload date:
- Size: 51.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
136ac17f9331fce6e0f4b32eb0d570e345a6a03ba8996f577ddea971ce8da1b2
|
|
| MD5 |
fb9198fa38182ca9079b461c480630b9
|
|
| BLAKE2b-256 |
3e79ff8871eb016ee8aa26be31512a201dc6488e348d478b95c6787df875e49f
|
File details
Details for the file napari_molecule_reader-0.1.4-py3-none-any.whl.
File metadata
- Download URL: napari_molecule_reader-0.1.4-py3-none-any.whl
- Upload date:
- Size: 33.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
7189e236191805b04ba1eccbe5cbcc5e9f25d2ba0df6d9fa14bc8996e66aca6d
|
|
| MD5 |
d93de8f5210f07327a8218e9b3de431d
|
|
| BLAKE2b-256 |
95aa555e10f8f7defe54ba38a8761a1480218f8fd23b8623f52cedda6a32a58b
|
