napari-openreadout
A napari reader plugin that opens raw microscopy and electron-microscopy files with OpenReadout. The formats it reads are listed at https://openreadout.github.io/openreadout/formats.html.
pip install napari napari-openreadout
napari slide.svs
- Lazy: layers are dask arrays; a plane (or, for large tiled planes, the tiles under the view) is decoded only when displayed.
- Multiscale: pyramidal files (CZI pyramids, SVS/NDPI/QPTIFF, VSI, Imaris, OME-TIFF with SubIFDs, OME-Zarr multiscales) open as multiscale layers.
- Channels become separate layers named after the file's channels, coloured by their recorded colours; scale is the physical pixel size in µm (and the time step in s).
- Every image of the file (CZI scene, ND2 position, LIF series) is its own layer.
Without napari, napari_openreadout.read(path) returns the same (data, kwargs, "image") tuples.
Guide: https://openreadout.github.io/openreadout/guides/napari.html. Licensed MIT OR Apache-2.0.
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Release files for napari-openreadout 0.1.0
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