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napari-opt-handler

License BSD-3 PyPI Python Version tests codecov napari hub

Optical Projection Tomography preprocessing plugin for napari


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

place for the gif

Jump to:

🛀 Usage

Starting point

  1. Data streamed from ImSwitch OPT widget (see details here[LINK])
  2. Loaded images as data stack
  3. Other stack 3D volume data formats

Global settings

Tracking

Inplace operations

Corrections

Dark-field correction Bright-field correction Bad-pixel correction Intensity correction

Other

Binning ROI -Log

💻 Installation

You can install napari-opt-handler via pip:

pip install napari-opt-handler

To install latest development version :

pip install git+https://github.com/QBioImaging/napari-opt-handler.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

🚓 License

Distributed under the terms of the BSD-3 license, "napari-opt-handler" is free and open source software

🔨 Issues

If you encounter any problems, please file an issue along with a detailed description.

Metadata

Release files for napari-opt-handler 0.0.3

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Source distribution (sdist)

Source distribution for napari-opt-handler 0.0.3
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napari_opt_handler-0.0.3.tar.gz 36.5 MB Without provenance Details for napari_opt_handler-0.0.3.tar.gz

Built distribution (wheel)

Table of built distributions (wheels) for napari-opt-handler 0.0.3
File Interpreter ABI Platform Actions
napari_opt_handler-0.0.3-py3-none-any.whl Python 3 none any Details for napari_opt_handler-0.0.3-py3-none-any.whl

Total release size: 73.2 MB

Release files / napari_opt_handler-0.0.3.tar.gz

Download URL napari_opt_handler-0.0.3.tar.gz
Size 36.5 MB
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3a60a913ad789073c2514727027fb3612e9fe518a0abd993cf7031d06f316106
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Release files / napari_opt_handler-0.0.3-py3-none-any.whl

Download URL napari_opt_handler-0.0.3-py3-none-any.whl
Size 36.7 MB
Tags Python 3
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41628b1600946e4670dacbc854cd92fc111738f6bdd7768d1f32b8984f1d4ad2
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Uploaded via twine/5.1.1 CPython/3.12.4

Security for napari-opt-handler 0.0.3

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0.0.3 This release

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