.. image:: resources/Tardis_logo_2.png :width: 512 :align: center :target: https://smlc-nysbc.github.io/TARDIS/
========
.. image:: https://img.shields.io/github/v/release/smlc-nysbc/napari-tardis_em :target: https://img.shields.io/github/v/release/smlc-nysbc/tardis
.. image:: https://img.shields.io/badge/Join%20Our%20Community-Slack-blue :target: https://join.slack.com/t/tardis-em/shared_invite/zt-27jznfn9j-OplbV70KdKjkHsz5FcQQGg
.. image:: https://img.shields.io/github/downloads/smlc-nysbc/napari-tardis_em/total :target: https://img.shields.io/github/downloads/smlc-nysbc/tardis/total
.. image:: https://github.com/SMLC-NYSBC/tardis/actions/workflows/sphinx_documentation.yml/badge.svg :target: https://github.com/SMLC-NYSBC/tardis/actions/workflows/sphinx_documentation.yml
Napari plugin for napari-TARDIS-em
Napari [gen2] plugin for Cry-EM and Cryo-ET micrograph segmentation with TARDIS-em.
Citation
DOI [BioRxiv] <http://doi.org/10.1101/2024.12.19.629196>__
Kiewisz R. et.al. 2024. Accurate and fast segmentation of filaments and membranes in micrographs and tomograms with TARDIS.
DOI [Microscopy and Microanalysis] <http://dx.doi.org/10.1093/micmic/ozad067.485>__
Kiewisz R., Fabig G., Müller-Reichert T. Bepler T. 2023. Automated Segmentation of 3D Cytoskeletal Filaments from Electron Micrographs with TARDIS. Microscopy and Microanalysis 29(Supplement_1):970-972.
Link: NeurIPS 2022 MLSB Workshop <https://www.mlsb.io/papers_2022/Membrane_and_microtubule_rapid_instance_segmentation_with_dimensionless_instance_segmentation_by_learning_graph_representations_of_point_clouds.pdf>__
Kiewisz R., Bepler T. 2022. Membrane and microtubule rapid instance segmentation with dimensionless instance segmentation by learning graph representations of point clouds. Neurips 2022 - Machine Learning for Structural Biology Workshop.
Quick Start
For more examples and advanced usage please find more details in our Documentation <https://smlc-nysbc.github.io/TARDIS/>__
- Create new conda enviroment
.. code-block::
conda create -n napari-tardis python=3.11
conda activate napari-tardis
- Install napari-TARDIS-em:
.. code-block:: bash
pip install napari-tardis-em
- Run Napari plugin
.. code-block:: bash
napari
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file napari_tardis_em-0.3.25.tar.gz.
File metadata
- Download URL: napari_tardis_em-0.3.25.tar.gz
- Upload date:
- Size: 278.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/6.1.0 CPython/3.11.11
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6cc20c27c852a28bebcc7fa4ed495680520f2406e4656bf7467b0fccf74b6270
|
|
| MD5 |
b63bc3304a187eb9dff788f23ee96345
|
|
| BLAKE2b-256 |
938588c11ebda7e277e9968af9c8041e4b426a1a0ed14a8a3239ca5a9caffc43
|
File details
Details for the file napari_tardis_em-0.3.25-py3-none-any.whl.
File metadata
- Download URL: napari_tardis_em-0.3.25-py3-none-any.whl
- Upload date:
- Size: 88.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/6.1.0 CPython/3.11.11
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
272d77fa9a785e94600b558bc39a92978def7dd4e5114753e1bb8f8bc2c392a1
|
|
| MD5 |
9dfdb4f429d0c281b1f7fd8f02cbd101
|
|
| BLAKE2b-256 |
966c893ffb4c4f7551aba090dde2bcb54d23f13a8108c8edeb7e507b23283121
|
