.. image:: resources/Tardis_logo_2.png :width: 512 :align: center :target: https://smlc-nysbc.github.io/TARDIS/
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Napari plugin for napari-TARDIS-em
Napari [gen2] plugin for Cry-EM and Cryo-ET micrograph segmentation with TARDIS-em.
Citation
DOI [BioRxiv] <http://doi.org/10.1101/2024.12.19.629196>__
Kiewisz R. et.al. 2024. Accurate and fast segmentation of filaments and membranes in micrographs and tomograms with TARDIS.
DOI [Microscopy and Microanalysis] <http://dx.doi.org/10.1093/micmic/ozad067.485>__
Kiewisz R., Fabig G., Müller-Reichert T. Bepler T. 2023. Automated Segmentation of 3D Cytoskeletal Filaments from Electron Micrographs with TARDIS. Microscopy and Microanalysis 29(Supplement_1):970-972.
Link: NeurIPS 2022 MLSB Workshop <https://www.mlsb.io/papers_2022/Membrane_and_microtubule_rapid_instance_segmentation_with_dimensionless_instance_segmentation_by_learning_graph_representations_of_point_clouds.pdf>__
Kiewisz R., Bepler T. 2022. Membrane and microtubule rapid instance segmentation with dimensionless instance segmentation by learning graph representations of point clouds. Neurips 2022 - Machine Learning for Structural Biology Workshop.
Quick Start
For more examples and advanced usage please find more details in our Documentation <https://smlc-nysbc.github.io/TARDIS/>__
- Create new conda enviroment
.. code-block::
conda create -n napari-tardis python=3.11
conda activate napari-tardis
- Install napari-TARDIS-em:
.. code-block:: bash
pip install napari-tardis-em
- Run Napari plugin
.. code-block:: bash
napari
Release files for napari-tardis-em 0.3.25
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari_tardis_em-0.3.25.tar.gz | 278.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_tardis_em-0.3.25-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 366.8 kB
Release files / napari_tardis_em-0.3.25.tar.gz
| Download URL | napari_tardis_em-0.3.25.tar.gz |
|---|---|
| Size | 278.0 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / napari_tardis_em-0.3.25-py3-none-any.whl
| Download URL | napari_tardis_em-0.3.25-py3-none-any.whl |
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| Size | 88.8 kB |
| Tags | Python 3 |
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