A plugin for optical projection tomography reconstruction with model-based neural networks.
Project description
napari-tomodl
A plugin for optical projection tomography reconstruction with model-based neural networks.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
This package requires torch-radon for optimized GPU tomographic reconstruction:
pip install 'torch-radon @ https://rosh-public.s3-eu-west-1.amazonaws.com/radon-v2/cuda-11.1/torch-1.8/torch_radon-2.0.0-cp38-cp38-linux_x86_64.whl'
and PyTorch == 1.8.0 via wheel, whica can be downloaded and installed with:
pip install 'torch @ https://download.pytorch.org/whl/cu111/torch-1.8.0%%2Bcu111-cp38-cp38-linux_x86_64.whl'
You can install napari-tomodl via pip:
pip install napari-tomodl
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license, "napari-tomodl" is free and open source software
Issues
If you encounter any problems, please [file an issue] along with a detailed description.
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Source Distribution
Built Distribution
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