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Deep learning-based FISH spot calling method.

Project description


License MIT PyPI Python Version tests napari hub

Deep learning-based FISH spot calling method. The napari plugin for U-FISH.



  • Sample image
  • Inference interface
    • Inference parameters
    • Load model from path
    • Help information dialog
  • Training interface

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.


You can install napari-ufish via pip:

pip install napari-ufish


Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


Distributed under the terms of the MIT license, "napari-ufish" is free and open source software


If you encounter any problems, please [file an issue] along with a detailed description.

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