napari-ufish 0.0.1

Deep learning-based FISH spot calling method.

napari-ufish

Deep learning-based FISH spot calling method. The napari plugin for U-FISH.

Links

• U-FISH
• U-FISH models
• FISH_spots dataset

TODO List

• Sample image
• Inference interface
  • Inference parameters
  • Load model from path
  • Help information dialog
• Training interface

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This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-ufish via pip:

pip install napari-ufish

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-ufish" is free and open source software

Issues

If you encounter any problems, please [file an issue] along with a detailed description.