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Control point mapping and coordination transformation using napari

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Control point mapping and coordination transformation using napari


This package requires Python 3.7 or newer.

Python package dependencies are listed in requirements.txt.

Using virtual environments is strongly recommended.


Install napping and its dependencies with:

pip install napping

Environment setup example: mapping IMC and slidescanner images

As napari is under active development, the use of virtual environments is strongly encouraged. For example, to set up an environment for aligning Imaging Mass Cytometry (IMC, .mcd/.txt) and bright-field/immunofluorescence slidescanner (.czi) images:

conda create -n napping python
conda activate napping
pip install napping napari-imc napari-czifile2

Afterwards, napping can be started from inside the environment:



Use napping for control point mapping and coordinate transformation


Created and maintained by Jonas Windhager







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