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Control point mapping and coordination transformation using napari

Project description

napping

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Control point mapping and coordination transformation using napari

Requirements

This package requires Python 3.7 or newer.

Python package dependencies are listed in requirements.txt.

Using virtual environments is strongly recommended.

Installation

Install napping and its dependencies with:

pip install napping

Environment setup example: mapping IMC and slidescanner images

As napari is under active development, the use of virtual environments is strongly encouraged. For example, to set up an environment for aligning Imaging Mass Cytometry (IMC, .mcd/.txt) and bright-field/immunofluorescence slidescanner (.czi) images:

conda create -n napping python
conda activate napping
pip install napping napari-imc napari-czifile2

Afterwards, napping can be started from inside the environment:

napping

Usage

Use napping for control point mapping and coordinate transformation

Authors

Created and maintained by Jonas Windhager jonas.windhager@uzh.ch

Contributing

Contributing

Changelog

Changelog

License

MIT

Project details


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