Nexotype MCP Server
AI-powered biomedical knowledge graph for drug discovery, genomics, and market intelligence.
Connect your AI tools to the Nexotype platform and query the biomedical knowledge graph through conversation.
Installation
pip install nexotype-mcp
Or with uv:
# Install uv (if not already installed)
brew install uv
# Add uv tools to PATH (one-time setup)
echo 'export PATH="$HOME/.local/bin:$PATH"' >> ~/.zshrc
source ~/.zshrc
# Install nexotype-mcp
uv tool install nexotype-mcp
Already installed? Update:
pip install --upgrade nexotype-mcp
# or
uv tool upgrade nexotype-mcp
Authentication
nexotype-cli login
Enter your email and password. Credentials are stored securely at ~/.nexotype/credentials.json (chmod 600).
Configure Your AI Client
Claude Desktop
Edit ~/Library/Application Support/Claude/claude_desktop_config.json (macOS) or %APPDATA%\Claude\claude_desktop_config.json (Windows):
{
"mcpServers": {
"nexotype": {
"command": "nexotype-mcp"
}
}
}
Claude Code
claude mcp add nexotype -- nexotype-mcp
VS Code / Cursor
Add to your MCP settings:
{
"nexotype": {
"command": "nexotype-mcp"
}
}
Restart the application after saving.
Tools (28)
Graph Intelligence (6 tools)
| Tool | Description |
|---|---|
explore_network |
N-hop neighborhood of any entity |
find_path |
Shortest path between two entities |
find_similar |
Entities sharing the most relationships |
company_deep_dive |
Full portfolio of a pharma/biotech company |
drug_discovery |
Targets, pathways, indications for a drug |
competitive_landscape |
All drugs and companies targeting a protein |
AI Query (1 tool)
| Tool | Description |
|---|---|
ask_knowledge_graph |
Natural language question → grounded answer from graph |
Search & Browse (2 tools)
| Tool | Description |
|---|---|
search_entities |
List entities of any of the 61 types |
get_entity |
Full details for a specific entity |
Context (3 tools)
| Tool | Description |
|---|---|
get_permissions |
Check subscription tier and domain access |
list_subjects |
List available biological subjects |
set_subject |
Set active subject for personalization tools |
Personalized Health (10 tools)
| Tool | Description |
|---|---|
get_user_profile |
Personal info linked to the subject |
list_user_variants |
Detected genomic variants |
list_biomarker_readings |
Time-series health data |
create_biomarker_reading |
Log a new biomarker measurement |
list_treatment_logs |
Intervention history |
create_treatment_log |
Log a new treatment |
list_pathway_scores |
Pathway health scores |
list_recommendations |
Personalized treatment suggestions |
upload_genomic_file |
Upload VCF/23andMe file for analysis |
get_processing_status |
Check genomic file processing progress |
Commercial Intelligence (6 tools)
| Tool | Description |
|---|---|
list_market_organizations |
Pharma/biotech companies |
get_market_organization |
Full company details |
list_patents |
Patent filings and status |
list_development_pipelines |
Clinical trial phases |
list_regulatory_approvals |
FDA/EMA approvals |
list_licensing_agreements |
Commercial partnerships |
Example Queries
"What drugs target EGFR and are in Phase III?"
"Show me Novo Nordisk's full portfolio"
"What variants are associated with Alzheimer's risk?"
"Compare GLP-1 receptor agonists across companies"
"Who else is targeting mTOR?"
"List all therapeutic peptides in the database"
"What are my detected genomic variants?"
CLI Commands
| Command | Description |
|---|---|
nexotype-cli login |
Authenticate via browser (OAuth device flow) |
nexotype-cli login --basic |
Authenticate with email/password (headless fallback) |
nexotype-cli logout |
Delete stored credentials |
nexotype-cli status |
Show current auth status |
Environment Variables
| Variable | Default | Description |
|---|---|---|
NEXOTYPE_API_URL |
http://localhost:8000 |
API server URL |
1 maintainer
Metadata
1 maintainer
Release files for nexotype-mcp 0.8.8
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| nexotype_mcp-0.8.8.tar.gz | 38.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| nexotype_mcp-0.8.8-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 84.2 kB
Release files / nexotype_mcp-0.8.8.tar.gz
| Download URL | nexotype_mcp-0.8.8.tar.gz |
|---|---|
| Size | 38.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
8e7e6da74d1506311830942aa0b59a6bd2adf51cacc46a862b0de3a3beec54cb
|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
uv/0.12.18 {"installer":{"name":"uv","version":"0.12.18","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"macOS","version":null,"id":null,"libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":null}
|
Release files / nexotype_mcp-0.8.8-py3-none-any.whl
| Download URL | nexotype_mcp-0.8.8-py3-none-any.whl |
|---|---|
| Size | 46.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
16c920991c0571ff63102aed5b63139fb225ccc29c3aecc92160fc9c0b320b2d
|
|
BLAKE2b-256 checksum How to use checksums |
336cf8d13701686882b8c4e5fa5928dc0713127d9bc397582a6cdb2c514f25f6
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
uv/0.12.18 {"installer":{"name":"uv","version":"0.12.18","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"macOS","version":null,"id":null,"libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":null}
|
