A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
Project description
ngff-zarr
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
✨ Features
- Minimal dependencies
- Work with arbitrary Zarr store types
- Lazy, parallel, and web ready -- no local filesystem required
- Process extremely large datasets
- Conversion of most bioimaging file formats
- Multiple downscaling methods
- Supports Python>=3.10
- Reads OME-Zarr v0.1 to v0.5 into simple Python data classes with Dask arrays
- Optional OME-Zarr data model validation during reading
- Writes OME-Zarr v0.4 to v0.5
- Sharded Zarr stores
- Optional writing via tensorstore
Documentation
More information on command line usage, the Python API, library features, and how to contribute can be found in our documentation.
See also
License
ngff-zarr is distributed under the terms of the
MIT license.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file ngff_zarr-0.38.0.tar.gz.
File metadata
- Download URL: ngff_zarr-0.38.0.tar.gz
- Upload date:
- Size: 566.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
ca719ad7b4da194986de8360c193e4f5068c06caa349c18c302873830a582104
|
|
| MD5 |
b0d760b9d2a401e6f4b496bb15e43d07
|
|
| BLAKE2b-256 |
073aea45a8fb52516f35eb86fab997145c0babdc0751edd8bc1686422a3956f2
|
Provenance
The following attestation bundles were made for ngff_zarr-0.38.0.tar.gz:
Publisher:
release.yml on fideus-labs/ngff-zarr
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
ngff_zarr-0.38.0.tar.gz -
Subject digest:
ca719ad7b4da194986de8360c193e4f5068c06caa349c18c302873830a582104 - Sigstore transparency entry: 2131571108
- Sigstore integration time:
-
Permalink:
fideus-labs/ngff-zarr@19762e39e5f80a367333c1b42812b52fa5888f67 -
Branch / Tag:
refs/tags/py-v0.38.0 - Owner: https://github.com/fideus-labs
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
release.yml@19762e39e5f80a367333c1b42812b52fa5888f67 -
Trigger Event:
push
-
Statement type:
File details
Details for the file ngff_zarr-0.38.0-py3-none-any.whl.
File metadata
- Download URL: ngff_zarr-0.38.0-py3-none-any.whl
- Upload date:
- Size: 195.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
2f07ca50ad3b912938e4777ce2de9b8f3350f370bf73702143018933f73a0e4a
|
|
| MD5 |
08b7e6283639ef3474de74c85d9fceb4
|
|
| BLAKE2b-256 |
bbba659fb680390f648e28e256659640e44fbe02b03e12cccdd20b14827e16f3
|
Provenance
The following attestation bundles were made for ngff_zarr-0.38.0-py3-none-any.whl:
Publisher:
release.yml on fideus-labs/ngff-zarr
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
ngff_zarr-0.38.0-py3-none-any.whl -
Subject digest:
2f07ca50ad3b912938e4777ce2de9b8f3350f370bf73702143018933f73a0e4a - Sigstore transparency entry: 2131571201
- Sigstore integration time:
-
Permalink:
fideus-labs/ngff-zarr@19762e39e5f80a367333c1b42812b52fa5888f67 -
Branch / Tag:
refs/tags/py-v0.38.0 - Owner: https://github.com/fideus-labs
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
release.yml@19762e39e5f80a367333c1b42812b52fa5888f67 -
Trigger Event:
push
-
Statement type:
