nima 0.5.3

Numerical IMage Analyses.

A library and a cli to help image analysis based on scipy.ndimage and scikit-image.

Features

• easy dark and flat correction

• automatic cell segmentation

• easy ratio analyses

Installation

$ pyenv virtualenv 3.6.13 nima-0.3.1-py36 $ poetry install $ pip install .

Optionally:

$ python -m ipykernel install –user –name=”nima0.3.1”

# Jedi not working %config Completer.use_jedi = False for python >= 3.7 should not be needed because ipython >= 7.20 will be used.

Usage

To use nima in a project:

from nima import nima

See documentation.

Description

A longer description of your project goes here…

Note

poetry rocks? development my idea is to use global flake8 and black and no need to track linting and safety in poetry. KISS.

pyenv activate nima-… poetry install pre-commit install before next first commit: pre-commit run –all-files

pyenv activare nima-0.2 poetry install pip install . so it is not installed in development mode and this version will persist to updates.

todo

• restore sane complexity value

• CI and static typing