nima 0.5.5

Numerical IMage Analyses.

A library and a cli to help image analyses based on scipy.ndimage and scikit-image.

Features

• easy dark and flat correction
• automatic cell segmentation
• easy ratio analyses

Installation

:

pyenv virtualenv 3.10.4 nima-0.5.4
pyenv activate
poetry install
pip install .

Optionally:

python -m ipykernel install --user --name="nima0.3.1"

Usage

To use nima in a project:

from nima import nima

See documentation for the nima command line.

Description

A longer description of your project goes here...

Note

pyenv activate nima-... poetry install pre-commit install before next first commit: pre-commit run --all-files

pyenv activate nima-0.2 poetry install pip install .

so it is not installed in development mode and this version will persist to updates.

todo

• restore sane complexity value (< 21).