nuc2d 0.1.3

A Python library for parsing, annotating, laying out, and rendering nucleic acid secondary structures.

nuc2d

nuc2d is a Python library for parsing, annotating, laying out, and rendering nucleic acid secondary structures.

Installation

pip install nuc2d

Example

from nuc2d import draw_svg

dpp_string = "(((..+...)))"

svg = draw_svg(
    dpp_string=dpp_string,
)

svg.saveas("output.svg")

The dpp_string argument should be specified in dot-parens-plus notation.

If you are using Jupyter Notebook or JupyterLab, you can also display the generated SVG directly:

from IPython.display import SVG, display

display(SVG(svg.tostring()))

Optional sequence and base-pair probability annotations can be provided through the sequences and probs arguments:

svg = draw_svg(
    dpp_string=dpp_string,
    sequences=sequences,
    probs=probs,
)

License

This project is licensed under the MIT License.