A genomic variant analysis platform

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  • Author: Ryangguk Kim
  • Tags genomic , variant , analysis , interpretation , genome
  • Requires: Python >=3.8
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Project description

OakVar logo

OakVar: Genomic Variant Analysis Platform

Mission

  • OakVar is a bridge between cutting-edge genomics research and everyday people.

  • OakVar democratizes access to genomics knowledge for all.

What it does

  • Annotate genomic variants with diverse annotation sources.

  • Make databases of annotated variants.

  • Query annotated variants with filter sets.

  • Make reports in diverse formats.

  • Visualize annotated variants with graphical user interface.

  • Works via CLI and GUI.

  • Easily develop, run, and distribute CLI and GUI genomics apps. OakVar acts as an operating system for genomics apps.

  • Connect genomic data to AI/ML models.

Internship (currently full)

The main project will be OakVar. Full remote work. Unpaid position (no funding yet). Please send your application to rkim@oakbioinformatics.com.

Resources

Ready to start? OakVar Documentation

Subscribe to the mailing list: Be in the loop and notified of the new releases and news of OakVar.

Medium: https://medium.com/oakvar

Discord: https://discord.gg/wZfkTMKTjG

Reddit: https://www.reddit.com/r/oakvar

Email: rkim@oakbioinformatics.com

Many Thanks to Our Sponsors

Organizational Sponsors

Just DNA-Seq

Individual Sponsors

RegenCenter

OakVar is in CodeX

CodeX logo

License

OakVar is licensed under dual licensing: 1) APGL v3 or higher and 2) paid subscription for commercial or closed-source use. For full license information, see LICENSE.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for oakbioinformatics from gravatar.com oakbioinformatics

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • Author: Ryangguk Kim
  • Tags genomic , variant , analysis , interpretation , genome
  • Requires: Python >=3.8

Release history Release notifications | RSS feed

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