A Python library for parsing OBO(Open Biological and Biomedical Ontologies) files.
Installation
pip install obo_parser
Usage
Use in Command Line
obo_parser headers -f path/to/obo_file.obo
obo_parser headers -f path/to/obo_file.obo -o headers.json
obo_parser terms -f path/to/obo_file.obo
obo_parser terms -f path/to/obo_file.obo -o terms.jl
Use in Python
from obo_parser.parser import OBO_Parser
obo = OBO_Parser('./hp.obo')
print(obo.headers)
for term in obo.terms:
print(term)
# accessing term attribute
print(term.id, term.name)
print(term['id'], term['name'])
print(term.get('id'), term.get('name'))
# accessing term dict
print(term._data)
print(dict(term))
1 maintainer
Metadata
1 maintainer
Release files for obo-parser 1.0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| obo_parser-1.0.3.tar.gz | 4.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| obo_parser-1.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 8.9 kB
Release files / obo_parser-1.0.3.tar.gz
| Download URL | obo_parser-1.0.3.tar.gz |
|---|---|
| Size | 4.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
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Release files / obo_parser-1.0.3-py3-none-any.whl
| Download URL | obo_parser-1.0.3-py3-none-any.whl |
|---|---|
| Size | 4.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/4.0.2 CPython/3.8.8
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