A Python library for parsing OBO (Open Biological and Biomedical Ontologies) files.
Project description
A Python library for parsing OBO(Open Biological and Biomedical Ontologies) files.
Installation
pip install obo_parser
Usage
Use in Command Line
obo_parser headers -f path/to/obo_file.obo
obo_parser headers -f path/to/obo_file.obo -o headers.json
obo_parser terms -f path/to/obo_file.obo
obo_parser terms -f path/to/obo_file.obo -o terms.jl
Use in Python
from obo_parser.parser import OBO_Parser
obo = OBO_Parser('./hp.obo')
print(obo.headers)
for term in obo.terms:
print(term)
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