For analysing and meta-analysing plate-reader data
Project description
Omniplate
A Python package for analysing data from plate-reader studies of growing biological cells. Users can correct for autofluorescence, determine growth rates and the amount of fluorescence per cell, and simultaneously analyse multiple experiments.
Documentation
A tutorial is available.
Development history
v3.0: Consistent use of snake_case, but breaking backwards compatibilityv3.0.2: Only for python 3.11. Nunchaku updated.
Citation
If you find the software useful, please consider citing:
Montaño-Gutierrez, L. F., Moreno, N. M., Farquhar, I. L., Huo, Y., Bandiera, L., & Swain, P. S. (2022). Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers. PLOS Computational Biology, 18(5), e1010138.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file omniplate-3.0.24.tar.gz.
File metadata
- Download URL: omniplate-3.0.24.tar.gz
- Upload date:
- Size: 65.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/2.1.1 CPython/3.13.3 Darwin/25.2.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
e0fec46432a54996978d9c4cba13d92f67e3f4defd61843f8ec0b8a8374cfad8
|
|
| MD5 |
36ffa615d634fe411418aae9dadfd89b
|
|
| BLAKE2b-256 |
0a384fa4fdbca096050358ec80ee959915a542c76fc6a44535fabdb5cd8701c2
|
File details
Details for the file omniplate-3.0.24-py3-none-any.whl.
File metadata
- Download URL: omniplate-3.0.24-py3-none-any.whl
- Upload date:
- Size: 78.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/2.1.1 CPython/3.13.3 Darwin/25.2.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
c230a6d15934adea7cc8af140daaf3f52835f7ba0edf6f8078e627cd624cf9c7
|
|
| MD5 |
2bc4c112a6d83175e22d3d72ad68bc17
|
|
| BLAKE2b-256 |
55af3f50574358a077bfcea34f2ad83f0b05c40945a72e032ad49cd1ecf1baf2
|
