Omniplate

A Python package for analysing data from plate-reader studies of growing biological cells. Users can correct for autofluorescence, determine growth rates and the amount of fluorescence per cell, and simultaneously analyse multiple experiments.

Documentation

A tutorial is available.

Development history

  • v3.0: Consistent use of snake_case, but breaking backwards compatibility
  • v3.0.2: Only for python 3.11. Nunchaku updated.

Citation

If you find the software useful, please consider citing:

Montaño-Gutierrez, L. F., Moreno, N. M., Farquhar, I. L., Huo, Y., Bandiera, L., & Swain, P. S. (2022). Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers. PLOS Computational Biology, 18(5), e1010138.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for swainlab from gravatar.com swainlab

Credits

Author: Peter Swain

License

MIT License (MIT)

Requires

Python <3.12, >=3.11

Tags

omniplate systems biology bioinformatics plate readers

Classifiers

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This release

3.0.31 This release

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3.0.30

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3.0.25

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3.0.24

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2.1

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1.1rc0

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1.0rc0

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1.0b0

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0.9.4.dev0

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0.9.0.dev0

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0.8.14.dev0

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0.8.11.dev0

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0.8.10.dev0

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