Omniplate

A Python package for analysing data from plate-reader studies of growing biological cells. Users can correct for autofluorescence, determine growth rates and the amount of fluorescence per cell, and simultaneously analyse multiple experiments.

Documentation

A tutorial is available.

Development history

  • v3.0: Consistent use of snake_case, but breaking backwards compatibility
  • v3.0.2: Only for python 3.11. Nunchaku updated.

Citation

If you find the software useful, please consider citing:

Montaño-Gutierrez, L. F., Moreno, N. M., Farquhar, I. L., Huo, Y., Bandiera, L., & Swain, P. S. (2022). Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers. PLOS Computational Biology, 18(5), e1010138.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (3.0.31)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for swainlab from gravatar.com swainlab

Credits

Author: Peter Swain

License

MIT License (MIT)

Requires

Python <3.12, >=3.11

Tags

omniplate systems biology bioinformatics plate readers

Classifiers

Report project as malware

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Release history Release notifications | RSS feed

3.0.31

2 files

3.0.30

2 files

3.0.25

2 files

3.0.24

2 files

3.0.23

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3.0.22

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3.0.21

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This release

3.0.3 This release

2 files

3.0.2

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3.0.1

2 files

3.0

2 files

2.11.12

2 files

2.11.11

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2.11.1

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2.11

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2.1

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2.0

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1.13

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1.12

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1.11

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1.1

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Pre-release

1.1rc0

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1.0

2 files

Pre-release

1.0rc0

2 files

Pre-release

1.0b0

2 files

Pre-release

1.0a0

2 files

0.9.961

2 files

0.9.96

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0.9.95

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0.9.94

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0.9.93

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0.9.92

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0.9.91

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0.9.85

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0.9.84

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0.9.82

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0.9.51

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0.9.50

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0.9.47

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0.9.46

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0.9.45

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0.9.44

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0.9.43

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0.9.42

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0.9.41

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0.9.9

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0.9.6

2 files

0.9.4

2 files

Pre-release

0.9.4.dev0

2 files

Pre-release

0.9.0.dev0

2 files

Pre-release

0.8.14.dev0

2 files

Pre-release

0.8.11.dev0

2 files

Pre-release

0.8.10.dev0

2 files

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