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omop-cdm

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omop-cdm is a Python package that contains SQLAlchemy declarative table definitions of several versions of the OHDSI OMOP CDM.

It can be used for both data mapping and data analysis/exploration workflows.

Installation

omop-cdm requires Python >= 3.10.

Install from PyPI:

pip install omop-cdm

Usage

See User documentation

Supported databases

The omop-cdm table definitions are tested to be compatible with PostgreSQL.

Though not officially supported, omop-cdm doesn't use postgres-specific features of SQLAlchemy, so it can likely be used for other database types as well.

CDM versions

omop-cdm contains table definitions for the following CDM versions:

Getting Involved

  • Any bugs, issues or ideas for improvement can be submitted via the GitHub Issues page.
  • If you are developing on the project, please see the contributing guide.

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