omop-cdm

omop-cdm is a Python package that contains SQLAlchemy declarative table definitions of several versions of the OHDSI OMOP CDM.

It can be used for both data mapping and data analysis/exploration workflows.

Installation

omop-cdm requires Python >= 3.10.

Install from PyPI:

pip install omop-cdm

Usage

See User documentation

Supported databases

The omop-cdm table definitions are tested to be compatible with PostgreSQL.

Though not officially supported, omop-cdm doesn't use postgres-specific features of SQLAlchemy, so it can likely be used for other database types as well.

CDM versions

omop-cdm contains table defintions for the following CDM versions:

CDM 5.4
CDM 5.3.1
CDM 6.0.0 (not recommended)

Getting Involved

Any bugs, issues or ideas for improvement can be submitted via the GitHub Issues page.
If you are developing on the project, please see the contributing guide.

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