Web Services
https://omxware.sl.cloud9.ibm.com:9420/swagger
SDK Documentation:
https://pages.github.ibm.com/GrandChallenge-Almaden/omxware-pypi/
Getting Started
https://pages.github.ibm.com/GrandChallenge-Almaden/omxware-pypi/build/html/usage.html
Help / Forums
http://omx-forums.sl.cloud9.ibm.com
Citation
Please contact the OMXWare Team via the Forums for updated citation information prior to publishing or presenting OMXWare content.
e.g: "OMXWare: Microbial Life at Scale" IBM Research, manuscript in preparation
Use with Docker
In an effort to make it easier for users and developers to get started with OMXWare, We have a 2 base docker images with python and OMXWare pre-installed. It also comes with a bunch of python libs like matplotlib, numpy along with some others.
1) Minimal: docker pull c0mpiler/alpine-omxware-base:latest
docker run -it --rm --name omxware -v "$(pwd):/opt/my_work" c0mpiler/alpine-omxware-base:latest ash
This is a relatively small docker image with just the required packages / libraries installed and setup.
Change the mount point to whatever you want on you host machine.
You may use this image as a base to build other docker containers / applications. Refer to: https://github.com/c0mpiler/alpine-omxware-base/blob/master/Dockerfile for specifics.
2) JupyterLab: docker pull c0mpiler/jupyter:latest
docker run -d --name jupyter --restart always -p 8888:8888 -e JUPYTER_ENABLE_LAB=yes \ -v /mnt/storage/jupyter:/home/jovyan/work c0mpiler/jupyter start.sh jupyter lab --LabApp.token=‘omxware’
This image has JupyterLab pre-installed and setup with some example OMXWare Jupyter notebooks.
Change the mount point /mnt/storage/jupyter to whatever you want on you host machine – so you can share files from your host with this docker image.
This image also has some example Jupyter notebooks for you to look at and get started.
Once you run the docker image – you can open up http://<host-name>:8888/lab? in your browser and the pwd is omxware.
The host-name is that of your host machine you run this docker image on. If you are running it on your laptop, the host-name is either localhost or 0.0.0.0
Release files for omxware 0.1.23
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| omxware-0.1.23-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Release files / omxware-0.1.23-py2.py3-none-any.whl
| Download URL | omxware-0.1.23-py2.py3-none-any.whl |
|---|---|
| Size | 33.0 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
ed66317af9d6f7513d11caf957686fa354302dc469c95dc7abe30121ed999d7a
|
|
BLAKE2b-256 checksum How to use checksums |
024c9b2686bdb188ee447baf844d66de09b4bce483ba509e8e083a15d1b6557f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.12.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.35.0 CPython/3.7.4
|
