PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project links

Key dates

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Latest release

6 maintainers

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Credits

Author: Chris Mungall

License

BSD License (BSD)

Provides Extra

dev test

Tags

ontology graph obo owl sparql networkx network

Classifiers

Report project as malware

Release files for ontobio 2.9.12

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for ontobio 2.9.12
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ontobio-2.9.12.tar.gz 263.5 kB Details

Built distribution (wheel)

Table of built distributions (wheels) for ontobio 2.9.12
File Interpreter ABI Platform
ontobio-2.9.12-py3-none-any.whl 319.1 kB Python 3 none any Details

Total release size: 582.6 kB

Release files / ontobio-2.9.12.tar.gz

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Size 263.5 kB
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2.9.12 This release

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