Library for working with OBO Library Ontologies and associations

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License: BSD License (BSD)

Author: Chris Mungall

Tags ontology, graph, obo, owl, sparql, networkx, network

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Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Project details

Project links

Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: BSD License (BSD)

Author: Chris Mungall

Tags ontology, graph, obo, owl, sparql, networkx, network

Maintainers

Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dougli1sqrd from gravatar.com dougli1sqrd Avatar for dustine32 from gravatar.com dustine32

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2.5.0

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2.1.1

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2.0.0

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2.0.0rc8 pre-release

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2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

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0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

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Files for ontobio, version 2.5.0
Filename, size File type Python version Upload date Hashes
Filename, size ontobio-2.5.0-py3.6.egg (275.2 kB) File type Egg Python version 3.6 Upload date Hashes View
Filename, size ontobio-2.5.0-py3-none-any.whl (281.6 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size ontobio-2.5.0.tar.gz (224.7 kB) File type Source Python version None Upload date Hashes View

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