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Library for working with OBO Library Ontologies and associations

Project description


ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).


Documentation is on readthedocs


See the Jupyter Notebooks for code examples

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