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Library for working with OBO Library Ontologies and associations

Project Description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Release history Release notifications

This version
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0.2.37

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0.2.36

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0.2.35

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0.2.34

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0.2.33

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0.1.1

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Filename, size & hash SHA256 hash help File type Python version Upload date
ontobio-0.2.37-py3.6.egg (145.8 kB) Copy SHA256 hash SHA256 Egg 3.6 Apr 26, 2018
ontobio-0.2.37-py3-none-any.whl (149.3 kB) Copy SHA256 hash SHA256 Wheel py3 Apr 26, 2018
ontobio-0.2.37.tar.gz (114.0 kB) Copy SHA256 hash SHA256 Source None Apr 26, 2018

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